Shiny-Calorie: A context-aware application for indirect calorimetry data analysis and visualization using R

Examples

IMPC data sets

Gene symbol

User guide

Metadata

Provided through standardized Excel metadata sheets [7]

Have additional metadata?

Datasets

Specify number of file(s)

Number of cohorts

Heat production

Select equation

Select second equation

Unit of energy

Miscellaneous

Regularize time

Specify manually

dt

Common columns

Actions

Defaults

Use default plot style

Use default color palette

Variable selection

Select indirect calorimetry platform

Select quantity to plot

FuelOxidation

Type of visualization

Grouping and filtering

Select group and filter by condition

Select a group as facet

Orientation

Select temperature

Temperature [°C]

Deviation from temperature [°C]

Experimental times

Annotate day/night light cycle

Select full days based on zeitgeber time

Select full consecutive calendrical days

Fraction of day missing [%]

Custom cage coordinates

Cage Color

Cage configuration

Food hamper (x_min)

Food hamper (x_max)

Food hamper (y_min)

Food hamper (y_max)

Water bottle (x_min)

Water bottle (x_max)

Water bottle (y_min)

Water bottle (y_max)

Scale (x_min)

Scale (x_max)

Scale (y_min)

Scale (y_max)

Light phase selection

Advanced options

Time Interval or Steady-State method to estimate RMR

Method

Frequency

Duration

CVs

VO2

VCO2

RER

VE*

Window size

Averaging width

Fraction best

Component:

Time averaging of measurements

Override averaging method (mean)

Method

Light cycle configuration

Override

Light threshold (Day)

Light cycle start

Light cycle stop

Color day

Color night

Time averaging of raw data

Time averaging [min]

Moving average (k)

Method

Time trimming

Selection of experimental times

Trim data (start and end of measurement times)

Exclude hours from start of measurements

Exclude hours from end of measurements

Select dates

Select days and samples

Selected and calculated quantities

Format

File name (Leave empty for auto-generation of a file name)

Download

All data (Input and data frames for plotting)

Download as zip file

Data tables for plotting

File name (Leave empty for auto-generation of a file name)

Download

Study details

File type
Name
Lab
Mouse strain
Date
Author
Number of samples
Number of genotypes
Number of diets
Number of sexes

		Promethion/Sable
		COSMED
		TSE PhenoMaster v7
		TSE PhenoMaster v8
		TSE LabMaster v6
		TSE LabMaster v5

Visualization and statistical data analysis

Metadata analysis

Dataset import

Statistics and visualization

Data curation

Result summary

Examples

IMPC data sets

User guide

Metadata

Datasets

Data preprocessing

Raw data curation

Consistency checks

Heat production

Miscellaneous

Actions

Defaults

Variable selection

Grouping and filtering

Experimental times

Cage configuration

Advanced options

Time Interval or Steady-State method to estimate RMR

CVs

Time averaging of measurements

Light cycle configuration

Time averaging of raw data

Time trimming

Select days and samples

Selected and calculated quantities

All data (Input and data frames for plotting)

Data tables for plotting

Study details

Overview

Advanced options

Windowed time-trace plot

Getting general help for Shiny-Calorie:

Supported input file formats

Contact the developer of the application

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Documentation and tutorial videos